WebSTR 1.0
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H. Sapiens (hg38)
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Data sources
WebSTR data is taken directly from these sources:
HipSTR hg19 reference STR regions available from the HipSTR github page
hg19.hipstr_reference.bed.gz
Gene annotations use GENCODE version 19 (Ensembl 74) available in the file genocde.gtf.gz obtained from the
ExAC data download
Imputation metrics from Supplementary Tables 1 and 2 of
Saini et al 2018
Mutation rate and constraint information from Gymrek et al. 2017 available for download from
s3://strconstraint/Gymrek_etal_SupplementalData1_v2.bed.gz
eSTR data is based on
Supplementary Dataset 1
of Fotsing et al.
Full eSTR summary statistic data:
eSTRGtex_DatasetS2.tar.gz
Per-locus selection metrics computed by SISTR:
SISTR results.txt
Read me:
README.txt
Downloads previously available on strcat.teamerlich.org
1000 Genomes Project Phase 1 calls (
Willems et al 2014)
phase_1_final_calls.vcf.gz
hg19_ref.tar.gz
expanded_hg19_ref.tar.gz
LobSTR calls on the Simons Genome Diversity Project (SGDP) (
Mallick et al 2016
and
Gymrek et al 2017
)
SGDP chr1 [
VCF
] [
index
]
SGDP chr2 [
VCF
] [
index
]
SGDP chr3 [
VCF
] [
index
]
SGDP chr4 [
VCF
] [
index
]
SGDP chr5 [
VCF
] [
index
]
SGDP chr6 [
VCF
] [
index
]
SGDP chr7 [
VCF
] [
index
]
SGDP chr8 [
VCF
] [
index
]
SGDP chr9 [
VCF
] [
index
]
SGDP chr10 [
VCF
] [
index
]
SGDP chr11 [
VCF
] [
index
]
SGDP chr12 [
VCF
] [
index
]
SGDP chr13 [
VCF
] [
index
]
SGDP chr14 [
VCF
] [
index
]
SGDP chr15 [
VCF
] [
index
]
SGDP chr16 [
VCF
] [
index
]
SGDP chr17 [
VCF
] [
index
]
SGDP chr18 [
VCF
] [
index
]
SGDP chr19 [
VCF
] [
index
]
SGDP chr20 [
VCF
] [
index
]
SGDP chr21 [
VCF
] [
index
]
SGDP chrX [
VCF
] [
index
]
SGDP chrY [
VCF
] [
index
]
splice STR bed
potential_spliceSTRs.bed.gz